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Repository xcms_plot_chromatogram
Owner: lecorguille
Synopsis: [Metabolomics][W4M][LC-MS] XCMS R Package - Preprocessing - Plot base peak intensity chromatogram (BPI) and total ion chromatogram (TIC)
Part of the W4M project: http://workflow4metabolomics.org XCMS: http://www.bioconductor.org/packages/release/bioc/html/xcms.html Filtration and Peak Identification using xcmsSet function from xcms R package to preprocess LC/MS data for relative quantification and statistical analysis
Type: unrestricted
Revision: 13:024974037c4e
This revision can be installed: True
Times cloned / installed: 538

Repository README files - may contain important installation or license information

Changelog/News

Version 3.12.0+galaxy* - 03/03/2020

  • UPGRADE: upgrade the xcms version from 3.6.1 to 3.12.0 (see XCMS News)

Version 3.6.1.0 - 03/09/2019

  • UPGRADE: upgrade the xcms version from 3.4.4 to 3.6.1 (see XCMS News)

Version 3.4.4.0 - 08/02/2019

  • UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News)

Version 3.0.0.0 - 07/03/2018

  • NEW: This new tool will plot base peak intensity chromatogram (BPI) and total ion chromatogram (TIC) from xcms experience. It will replace the one created by xcmsSet and retcor tools.
Dependencies of this repository

Repository no_unzip_datatype revision 7800ba9a4c1e owned by lecorguille
Repository rdata_xcms_datatypes revision 544f6d2329ac owned by lecorguille

Contents of this repository

Name Description Version Minimum Galaxy Version
Plots base peak intensity chromatogram (BPI) and total ion current chromatogram (TIC) from MSnbase or xcms experiment(s) 3.12.0+galaxy0 16.01

Categories
Metabolomics - Tools for use in the study of Metabolomics