| Kissplice, DiscoSNP and TakeABreak perform de novo variant identification and quantification. For these tools the general approach consists in 1) defining a model for the seeked elements; 2) detecting in one or several NGS datasets those elements that fit the model; 3) outputting those together with a score and their genomic neighborhood. Mapsembler focuses on sequences of interest within a micro targeted assembly, LorDec uses short reads for correcting third generation long reads, and finally Commet is dedicated to the comparison of numerous metagenomic read sets. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/colibread_kissplice
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| is a local transcriptome assembler for SNPs, indels and AS events | 2.4.0+galaxy1 | 23.1 | |