Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository data_manager_build_kraken2_database
Name: data_manager_build_kraken2_database
Owner: dfornika
Synopsis: Contains data managers that define and populate the kraken2_databases tool data table.
Kraken2 is a system for assigning taxonomic labels to short DNA
sequences, usually obtained through metagenomic studies. Previous attempts by other
bioinformatics software to accomplish this task have often used sequence alignment
or machine learning techniques that were quite slow, leading to the development
of less sensitive but much faster abundance estimation programs. Kraken aims to
achieve high sensitivity and high speed by utilizing exact alignments of k-mers
and a novel classification algorithm.
Content homepage: https://github.com/dfornika/galaxytools/
Development repository: https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/
Link to this repository: https://toolshed.g2.bx.psu.edu/view/dfornika/data_manager_build_kraken2_database/ffeb852407d6
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/dfornika/data_manager_build_kraken2_database
Type: unrestricted
Revision: 19:ffeb852407d6
This revision can be installed: True
Times cloned / installed: 467

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
database builder 2.0.8_beta_galaxy1 16.01

Data Managers
Name Version Data Tables
kraken2_build_database 2.0.8_beta_galaxy1 kraken2_databases

Categories
Data Managers - Utilities for Managing Galaxy's built-in data cache
Metagenomics - Tools enabling the study of metagenomes