Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository scanpy_integrate_combat
Name: scanpy_integrate_combat
Owner: ebi-gxa
Synopsis: Wrapper for the scanpy-scripts tool suite: Scanpy ComBat
Scanpy is a scalable toolkit for analyzing single-cell gene expression data.  It includes
preprocessing, visualization, clustering, pseudotime and trajectory inference and differential
expression testing. Scanpy-scripts provides a set of command-line wrapper scripts that are
composed from Scanpy API for easy execution of common analysis.
Content homepage: https://scanpy.readthedocs.io
Development repository: https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/tertiary-analysis/scanpy
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_integrate_combat/2de673ef8c13
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_integrate_combat
Type: unrestricted
Revision: 8:2de673ef8c13
This revision can be installed: True
Times cloned / installed: 558

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
adjust expression for variables that might introduce batch effect 1.8.1+galaxy0 18.01