Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository cat_summarise
Owner: iuc
Synopsis: CAT summarise from the CAT package
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs.
A CAT reference dataset requires about 250 GB of disk space.
Content homepage:
Type: unrestricted
Revision: 3:a8216def322b
This revision can be installed: True
Times cloned / installed: 367

Contents of this repository

Name Description Version Minimum Galaxy Version
the number of contigs or bins assigned to each taxonomic name 5.2.3+galaxy0 16.01

Metagenomics - Tools enabling the study of metagenomes