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Repository bam_to_scidx
Name: bam_to_scidx
Owner: iuc
Synopsis: Contains a tool that converts a BAM file to an ScIdx file.
Converts BAM data to ScIdx, the Strand-specific coordinate count format, which is used by tools within
the Chip-exo Galaxy flavor.  ScIdx files are 1-based.  The format consists of 5 columns: the chromosome,
the position of the genomic coordinate, the number of tags on the forward strand, the number of tags on
the reverse strand and the number of total tags on the position.  With pair-end reads, only the 5’ end of
READ1 will be used to create the ScIdx data file.  Tools that use this format include GeneTrack and MultiGPS.
Type: unrestricted
Revision: 5:408520e1ae1a
This revision can be installed: True
Times cloned / installed: 565

Contents of this repository

Name Description Version Minimum Galaxy Version
1.0.1 any

Convert Formats - Tools for converting data formats