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Repository bam_readtagger
Name: bam_readtagger
Owner: mvdbeek
Synopsis: Tags reads in a BAM file based on other BAM files.
Tags reads in a BAM file based on other BAM files.
Useful when inspecting reads that may originate from different sources
with different degrees of uncertainty.
Content homepage: https://github.com/bardin-lab/readtagger
Development repository: https://github.com/bardin-lab/readtagger/tree/master/galaxy
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/mvdbeek/bam_readtagger/08656cd6c989
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/mvdbeek/bam_readtagger
Type: unrestricted
Revision: 51:08656cd6c989
This revision can be installed: True
Times cloned / installed: 623

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
as area plot between BAM files 0.4.19 16.01
into tag field 0.4.19 16.01
of supplementary alignments 0.4.19 16.01
in bam files 0.4.19 16.01
modifies proper_pair flag in bam files 0.4.19 16.01
from multiple bam files 0.4.19 16.01
based on softclips in control files 0.4.19 16.01
from SAM/BAM alignment files as FASTQ 0.4.19 16.01

Categories
SAM - Tools for manipulating alignments in the SAM format
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA