Scanpy is a scalable toolkit for analyzing single-cell gene expression data. It includespreprocessing, visualization, clustering, pseudotime and trajectory inference and differential
expression testing. Scanpy-scripts provides a set of command-line wrapper scripts that are
composed from Scanpy API for easy execution of common analysis.
hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/scanpy_read_10x
Minimum Galaxy Version|
into hdf5 object handled by scanpy|