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Repository samtools_sort
Name: samtools_sort
Owner: devteam
Synopsis: Sort alignments by leftmost coordinates or read name.
This tool uses the SAMtools toolkit to sort alignments by leftmost
coordinates or read names.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_sort
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/samtools_sort/a430da4f04cd
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort
Type: unrestricted
Revision: 0:a430da4f04cd
This revision can be installed: True
Times cloned / installed: 11142
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 1.2 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
BAM dataset 2.0 any

Categories
Fastq Manipulation - Tools for manipulating fastq data
SAM - Tools for manipulating alignments in the SAM format