Repository ctat_discasm
Name: ctat_discasm
Owner: trinity_ctat
Synopsis: DISCASM extracts reads that map to reference genomes in a discordant fashion and performs a de novo transcriptome assembly of these reads
DISCASM aims to extract reads that map to reference genomes in a discordant fashion and optionally include reads that do not map to the genome at all, and perform a de novo transcriptome assembly of these reads. DISCASM relies on the output from STAR (as run via STAR-Fusion), and supports de novo transcriptome assembly using Trinity or Oases. -
Type: unrestricted
Revision: 0:a772e555b5a1
This revision can be installed: True
Times cloned / installed: 82

Contents of this repository

Name Description Version Minimum Galaxy Version
Discordant and Unmapped Read De novo Transcriptome Assembly 1.0.0 17.05

Assembly - Tools for working with assemblies
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis