Repository package_trinityrnaseq_2013_08_14
Name: package_trinityrnaseq_2013_08_14
Owner: jjohnson
Synopsis: Contains a tool dependency definition that downloads and compiles version 2013_08_14 of trinity
RNA-Seq De novo Assembly Using Trinity  
adds Trinity.pl to PATH environment variable
set TRINITY_HOME to the installation directory 
http://trinityrnaseq.sourceforge.net/index.html

Requires perl compiled to use threads, bioperl, and perl modules: PerlIO::gzip and Bio::DB::Sam
Link to this repository: https://toolshed.g2.bx.psu.edu/view/jjohnson/package_trinityrnaseq_2013_08_14/9be1cbdae115
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/package_trinityrnaseq_2013_08_14
Type: tool_dependency_definition
Revision: 0:9be1cbdae115
This revision can be installed: True
Times cloned / installed: 495
Dependencies of this repository

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
trinityrnaseq 2013_08_14 package

Categories
Tool Dependency Packages - Repositories that contain third-party tool dependency package installation definitions