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Repository vcfs2fasta
Name: vcfs2fasta
Owner: ulfschaefer
Synopsis: VCF to fasta file converter
Combine multiple VCFs into a single FASTA file.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/ulfschaefer/vcfs2fasta/96f393ad7fc6
Type: unrestricted
Revision: 22:96f393ad7fc6
This revision can be installed: True
Times cloned / installed: 19
Dependencies of this repository

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Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_readline_6_3 revision ca1a9400d4e1 owned by iuc (prior install required)
Repository package_bzlib_1_0 revision af4887e1f595 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision 944f93d45594 owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision c8a5c11cc921 owned by iuc (prior install required)
Repository package_gdbm_1_11 revision ed2537bccffc owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_libyaml_0_1_5 revision b36f26f0d34b owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_10_cython_0_23_1 revision 65f6ba2786d0 owned by ulfschaefer (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_python_2_7_numpy_1_9 revision f24fc0b630fc owned by iuc (prior install required)
Repository package_python_2_7_numpy_1_9 revision f24fc0b630fc owned by iuc (prior install required)
Repository package_freetype_2_5_2_matplotlib_fix revision 26586565bc22 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_atlas_3_10 revision 98c017ec230d owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 0efde9889efd owned by iuc (prior install required)
Repository package_libtool_2_4 revision 7f67694b167c owned by iuc (prior install required)
Repository package_python_2_7_10 revision bd7165ea6526 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision 588666932a32 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
bintrees 2.0.2 package
biopython 1.66 package
matplotlib 1.4 package
python 2.7.10 package
pyvcf 0.6.8dev package
pyyaml 3.11 package

Contents of this repository

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Name Description Version Minimum Galaxy Version
Takes a set of VCF files and outputs a multi fasta file with only the variant positions. 1.0 any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA