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Repository lofreq_call
Name: lofreq_call
Owner: iuc
Synopsis: Call variants with LoFreq in Galaxy.
LoFreq is a fast and sensitive variant-caller for inferring SNVs and indels
from next-generation sequencing data. It makes full use of base-call qualities
and other sources of errors inherent in sequencing (e.g. mapping or base/indel
alignment uncertainty), which are usually ignored by other methods or only
used for filtering.
Content homepage: https://csb5.github.io/lofreq/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/lofreq
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/lofreq_call/4805fe3d8fda
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call
Type: unrestricted
Revision: 7:4805fe3d8fda
This revision can be installed: True
Times cloned / installed: 3683

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
with LoFreq 2.1.5+galaxy2 18.01

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA