Repository paqmir_mirdeep2
Name: paqmir_mirdeep2
Owner: smarthey
Synopsis: Identification of novel and known miRNAs
This tool is part of the workflow PAQmiR for the *Prediction Annotation and Quantification of miRNA with miRDeep2
MiRDeep2 is a software package for identification of novel and known miRNAs in deep sequencing data. Furthermore, it can be used for miRNA expression profiling across samples.
This wrapper was forked from the rbc_mirdeep2 wrapper of the RNA-Bioinformatics network
   ==> https://www.denbi.de/network/rna-bioinformatics-center-rbc
   ==> https://github.com/bgruening
Modifications are the product of Valentin Marcon & Sylvain Marthey (Thanks to INRA Migale, IFB ressources & INRA GABI)
Content homepage: https://forgemia.inra.fr/sylvain.marthey/paqmir
Development repository: https://forgemia.inra.fr/sylvain.marthey/paqmir
Link to this repository: https://toolshed.g2.bx.psu.edu/view/smarthey/paqmir_mirdeep2/5a5279daf533
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/smarthey/paqmir_mirdeep2
Type: unrestricted
Revision: 0:5a5279daf533
This revision can be installed: True
Times cloned / installed: 242

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
identification of novel and known miRNAs 2.1.0 16.01

Categories
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis