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Repository sparql_uniprot

Name: sparql_uniprot

Owner: fabad

Synopsis: Tool that retrieves data from uniprot using its Sparql endpoint.

Detailed description:

Tool that retrieves data from uniprot using its Sparql endpoint. The search can be performed by the following fields:
Protein identifier
Protein full name
Gene name
Organism name
Disease annotation
Domain name
Similarity annotation
Location annotation
Function annotation
Pharmaceutical annotation
You can fill several fields and the tool will return a tabular file that will contain all fields filled.

Development repository: https://github.com/fanavarro/sparql_uniprot

Link to this repository: https://toolshed.g2.bx.psu.edu/view/fabad/sparql_uniprot/478f5587f12a

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/fabad/sparql_uniprot

Type: unrestricted

Revision: 23:478f5587f12a

This revision can be installed: True

Times cloned / installed: 254

Tool dependencies - repository tools require handling of these dependencies
Name	Version	Type
SPARQLWrapper	1.7.6	package

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Uniprot Sparql View tool metadata	Perform a search into uniprot database using its sparql interface.	0.1.0	16.01