| VariantDB is a flexible annotation and filtering portal for NGS data. It is a webbased platform that annotates variants using ANNOVAR, snpEff and other tools (1000g/ESP6500/dbSNPv137/RefSeq/Ensembl/UCSC genes/SIFT/MutationTaster/PhyloP/Polyphen2/gerp++/LRT/...) . Direct links are provided to visualise VCF and bam files in IGV.
VariantDB can be locally installed. |
hg clone https://toolshed.g2.bx.psu.edu/repos/geert-vandeweyer/vcf_to_variantdb
| Repository package_perl_libwww revision f217bf3faf3b owned by geert-vandeweyer |
| Name | Version | Type | |
|---|---|---|---|
| perl_module_libwww | 6.05 | package | |
| GALAXY_URL | set_environment | ||
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| 0.1.3 | any | ||