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Repository sam_pileup
Name: sam_pileup
Owner: devteam
Synopsis: Generate pileup from BAM dataset
Uses SAMTools'' pileup command to produce a pileup dataset from
a provided BAM dataset. It generates two types of pileup datasets depending on the
specified options. If Call consensus according to MAQ model? option is set to No,
the tool produces simple pileup. If the option is set to Yes, a ten column pileup
dataset with consensus is generated.
Content homepage:
Type: unrestricted
Revision: 4:a3b4ad6858ff
This revision can be installed: True
Times cloned / installed: 3324

Contents of this repository

Name Description Version Minimum Galaxy Version
from BAM dataset 1.1.3 16.04

SAM - Tools for manipulating alignments in the SAM format