| This tool is part of the workflow **PAQmiR** for the *Prediction Annotation and Quantification of miRNA with miRDeep2
This module assigns mature miRNAs to a set of precursors, and report the quantification of the best two mature (3p & 5p predicted from their position on the precursor) observed for each precursor. The module uses output files provided by the quantifier.pl module from miRdeep2 and assigns the matures to the precursors by using the following order of priority: - Mature known in the species studied (generaly all matures from miRBase known for the species are used) - Mature known in another species (all mature from miRBase, or only those corresponding to a subset of closely related species are used). In case where several mature are detected, mature with the highest count is chosen. - Mature unknown (generaly matures predicted by miRDeep2.pl module are used) Wrappers are the product of Valentin Marcon, Kevin Normand & Sylvain Marthey (Thanks to INRA Migale, IFB ressources & INRA GABI) |
hg clone https://toolshed.g2.bx.psu.edu/repos/smarthey/paqmir_postprocess_quantifier
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| filters results to quantify, annotate, and eliminate redundancy in miRNAs | 1.0.0 | 16.01 | |