Repository map_to_known_genes
Name: map_to_known_genes
Owner: alenail
Synopsis: Map MACS Peaks to Known Genes
Content homepage: https://github.com/fraenkel-lab/galaxytools/tree/master/map_to_known_genes
Link to this repository: https://toolshed.g2.bx.psu.edu/view/alenail/map_to_known_genes/3f12a2b0af50
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/alenail/map_to_known_genes
Type: unrestricted
Revision: 0:3f12a2b0af50
This revision can be installed: True
Times cloned / installed: 418
Dependencies of this repository

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
chipsequtil 1.0 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Map the peaks in <peaks file> to genes in <knownGene file>. <knownGene file> isformat is as specified in http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/knownGene.sql.<peaks file> format is as produced by MACS. If *auto* is chosen (default) file extension is examined for *.xls* for default MACS format or *.bed* for BED format. If the --detail option is provided, the following extra fields are appended to each row: peak loc, dist from feature, map type, map subtype 0.1 any

Categories
ChIP-seq - Tools for analyzing and manipulating ChIP-seq data.