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Repository glimmer_hmm

Name: glimmer_hmm

Owner: bgruening

Synopsis: GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model (GHMM)

Detailed description:

GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model (GHMM).
Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates
splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM.
It also utilizes Interpolated Markov Models for the coding and noncoding models . Currently, GlimmerHMM's GHMM
structure includes introns of each phase, intergenic regions, and four types of exons
(initial, internal, final, and single).

Content homepage: https://ccb.jhu.edu/software/glimmerhmm/

Development repository: https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm

Link to this repository: https://toolshed.g2.bx.psu.edu/view/bgruening/glimmer_hmm/5e14355f802a

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/glimmer_hmm

Type: unrestricted

Revision: 3:5e14355f802a

This revision can be installed: True

Times cloned / installed: 234