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Repository varscan_wrapper
Name: varscan_wrapper
Owner: geert-vandeweyer
Synopsis: Fork of fcaramia package correcting errors and additional options
fcaramia package didn't work. Corrected code, enabled native format output for indels and tool to extract the HighConfidence calls from varScan output 
Link to this repository: https://toolshed.g2.bx.psu.edu/view/geert-vandeweyer/varscan_wrapper/572397bbe057
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/geert-vandeweyer/varscan_wrapper
Type: unrestricted
Revision: 4:572397bbe057
This revision can be installed: True
Times cloned / installed: 308
Dependencies of this repository

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
VarScan 2.3.5 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
mutation caller for targeted, exome, and whole-genome resequencing 2.3.5 any
Extract HC calls from Somatic Caller 2.3.5 any
somatic mutation caller for cancer genomics 2.3.5 any
somatic mutation caller for cancer genomics 2.3.5 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis