| seq2HLA is an in-silico method, written in python and R, which takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA alleles and outputs the most likely HLA class I and class II genotypes (in 4 digit resolution), a p-value for each call, and the expression of each class https://bitbucket.org/sebastian_boegel/seq2hla |
hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/seq2hla
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| HLA genotype and expression from RNA-seq | 2.2.0 | 16.01 | |