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Repository antismash
Name: antismash
Owner: bgruening
Synopsis: Antismash allows the genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters
antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes.
It integrates and cross-links with a large number of in silico secondary metabolite analysis tools that have been published earlier.
antiSMASH is powered by several open source tools - NCBI BLAST+, HMMer 3, Muscle 3, Glimmer 3, FastTree, TreeGraph 2, Indigo-depict, PySVG and JQuery SVG.
Type: unrestricted
Revision: 5:bc88856eddab
This revision can be installed: True
Times cloned / installed: 1324

Repository README files - may contain important installation or license information

Galaxy wrapper for AntiSmash

This wrapper is copyright 2012-2014 by Björn Grüning.

This is a wrapper for the command line tool of antiSMASH.

antiSMASH allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes. It integrates and cross-links with a large number of in silico secondary metabolite analysis tools.

http://antismash.secondarymetabolites.org/

Marnix H. Medema, Kai Blin, Peter Cimermancic, Victor de Jager, Piotr Zakrzewski, Michael A. Fischbach, Tilmann Weber, Rainer Breitling & Eriko Takano (2011). antiSMASH: Rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters. Nucleic Acids Research 39: W339-W346.

Installation

Galaxy should be able to automatically install the dependencies using conda

History

v0.2 - Antismash update 4.0.2 v0.1 - Initial public release

Licence (MIT)

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

Contents of this repository

Name Description Version Minimum Galaxy Version
allows the genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters 6.1.1+galaxy1 20.01

Categories
Genome annotation - Tools for annotating genomic information
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis