Repository windowmasker_2_5_0
Name: windowmasker_2_5_0
Owner: yating-l
Synopsis: Identify repetitive regions using WindowMasker
WindowMasker identifies repetitive sequences and low complexity regions within a
genome assembly. WindowMasker works in two stages. In stage 1, mkcount produces a
unit counts file for a genome assembly. In stage 2, ustat uses the unit counts file
to mask repeats in the genome assembly. See Morgulis A, 2006 (PMID: 16287941) for details.
Content homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/lxr/source/src/app/winmasker/
Link to this repository: https://toolshed.g2.bx.psu.edu/view/yating-l/windowmasker_2_5_0/f80c9e6700ba
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/yating-l/windowmasker_2_5_0
Type: unrestricted
Revision: 0:f80c9e6700ba
This revision can be installed: True
Times cloned / installed: 503
Dependencies of this repository

Repository dependencies - Datatype definitions for NCBI BLAST
Repository blast_datatypes revision 01b38f20197e owned by devteam
Repository package_blast_plus_2_5_0 revision 5dd2b68c7d04 owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
blast 2.5.0 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Construct WindowMasker unit counts table 1.0 any
Mask sequences using a WindowMasker unit counts table 1.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis