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Repository trinity_rnaseq_protocol
Name: trinity_rnaseq_protocol
Owner: gkumar09
Synopsis: De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Link to this repository: https://toolshed.g2.bx.psu.edu/view/gkumar09/trinity_rnaseq_protocol/87c03e2aeba3
Type: unrestricted
Revision: 3:87c03e2aeba3
This revision can be installed: True
Times cloned / installed: 7

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
De novo assembly of RNA-Seq data Using Trinity 0.0.1 any
alignReads: short read alignment tool wrapper 0.0.1 any
Join RSEM estimates from multiple samples into a single matrix 0.0.1 any
tail-to-head 1.0.0 any
Analyze differential expression 0.0.1 any
Identify Differentially Expressed Transcripts Using EdgeR 0.0.1 any
run RSEM to estimate transcript abundances 0.0.1 any
Join RSEM estimates from multiple samples into a single matrix 0.0.1 any
Identify Differentially Expressed Transcripts Using EdgeR 0.0.1 any

Categories
Assembly - Tools for working with assemblies
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis