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Repository microsats_alignment_level
Name: microsats_alignment_level
Owner: devteam
Synopsis: Extract Orthologous Microsatellites from pair-wise alignments
This tool uses a modified version of SPUTNIK to fetch microsatellite
repeats from the input fasta sequences and extracts orthologous repeats from the
sputnik output. The modified version allows detection of mononucleotide microsatellites.
Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tools/microsats_alignment_level
Link to this repository: https://toolshed.g2.bx.psu.edu/view/devteam/microsats_alignment_level/6f8257ad464b
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/microsats_alignment_level
Type: unrestricted
Revision: 4:6f8257ad464b
This revision can be installed: True
Times cloned / installed: 2494
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_sputnik_1_0 revision 741d531ba353 owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
sputnik 1.0 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
from pair-wise alignments 1.0.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA