| This tool analyse MNase-seq BAM reads for extracting nucleosome positioning, nucleosome architecture comparision, nucleosome free regions, nucleosome stiffness, and many other analyses.
|
hg clone https://toolshed.g2.bx.psu.edu/repos/spanish_national_institue_of_bioinformatics/nucleosome_dynamics
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| : gather gene and genome-wide statistics on NucleR results | 0.1 | 16.01 | |
| : analyze aligned BAM files from MNAse (in RData format) | 0.1 | 16.01 | |
| : analyse nucleosome position phasing and periodicity within genes | 0.1 | 16.01 | |
| : detection of local changes in the position of nucleosomes, observed between two reference nucleosome maps | 0.1 | 16.01 | |
| : convert aligned BAM files to RData format for NucleosomeDynamics | 0.1 | 16.01 | |
| : determine Nucleosome Free Regions from nucleR nucleosome calls | 0.1 | 16.01 | |
| : gather gene and genome-wide statistics on nucleosomes at TSS | 0.1 | 16.01 | |
| : statistics on Nucleosome Dynamics analysis | 0.1 | 16.01 | |
| : gather gene and genome-wide statistics on Nucleosome Free Regions | 0.1 | 16.01 | |
| : gather gene and genome-wide statistics on nucleosome position stiffness | 0.1 | 16.01 | |
| : classify nucleosomes at Transcription Start Sites (TSS) | 0.1 | 16.01 | |
| : gather gene and genome-wide statistics on Nucleosome Gene Phasing | 0.1 | 16.01 | |
| : analyze stiffness of nucleosome positioning | 0.1 | 16.01 | |