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Repository minimap2
Name: minimap2
Owner: iuc
Synopsis: A fast pairwise aligner for genomic and spliced nucleotide sequences
Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA
sequences against a large reference database. Typical use cases include (1)
mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2)
finding overlaps between long reads with error rate up to ~15%; (3)
splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads
against a reference genome; (4) aligning Illumina single- or paired-end
reads; (5) assembly-to-assembly alignment; (6) full-genome alignment between
two closely related species with divergence below ~15%.
For ~10kb noisy reads sequences, minimap2 is tens of times faster than
mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more
accurate on simulated long reads and produces biologically meaningful alignment
ready for downstream analyses. For >100bp Illumina short reads, minimap2 is
three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/minimap2
Type: unrestricted
Revision: 13:1f06dccdc5d1
This revision can be installed: True
Times cloned / installed: 3848

Contents of this repository

Name Description Version Minimum Galaxy Version
A fast pairwise aligner for genomic and spliced nucleotide sequences 2.20+galaxy1 20.01

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data