Repository revision
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository rna_starsolo
Name: rna_starsolo
Owner: iuc
Synopsis: RNA STARSolo performs individual cell-level quantification
An ultra fast universal RNA-seq aligner that can optionally perform gene-level and sample-level quantification on the fly.
Note that while very fast, this tool requires a considerable amount of memory. As an example, hg19 requires about 30GB. See http://gettinggeneticsdone.blogspot.com.au/2012/11/star-ultrafast-universal-rna-seq-aligner.html
Most of this wrapper was originally written by Jeremy Goecks, with kibbitzing and automated dependency installation by Ross Lazarus.
The scRNA-seq mapping and quantification component is encapsulated within the STARSolo wrapper.
Content homepage: https://github.com/alexdobin/STAR
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/rna_starsolo/13022c3d3076
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/rna_starsolo
Type: unrestricted
Revision: 16:13022c3d3076
This revision can be installed: True
Times cloned / installed: 1542

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
mapping, demultiplexing and gene quantification for single cell RNA-seq 2.7.10b+galaxy3 21.01

Categories
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data
Transcriptomics - Tools for use in the study of Transcriptomics.