An ultra fast universal RNA-seq aligner that can optionally perform gene-level and sample-level quantification on the fly. Note that while very fast, this tool requires a considerable amount of memory. As an example, hg19 requires about 30GB. See http://gettinggeneticsdone.blogspot.com.au/2012/11/star-ultrafast-universal-rna-seq-aligner.html Most of this wrapper was originally written by Jeremy Goecks, with kibbitzing and automated dependency installation by Ross Lazarus. The scRNA-seq mapping and quantification component is encapsulated within the STARSolo wrapper. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/rna_starsolo
Name | Description | Version | Minimum Galaxy Version |
---|---|---|---|
mapping, demultiplexing and gene quantification for single cell RNA-seq | 2.7.2a1 | 17.01 |