|An ultra fast universal RNA-seq aligner that can optionally perform gene-level and sample-level quantification on the fly.|
Note that while very fast, this tool requires a considerable amount of memory. As an example, hg19 requires about 30GB. See http://gettinggeneticsdone.blogspot.com.au/2012/11/star-ultrafast-universal-rna-seq-aligner.html
Most of this wrapper was originally written by Jeremy Goecks, with kibbitzing and automated dependency installation by Ross Lazarus.
The scRNA-seq mapping and quantification component is encapsulated within the STARSolo wrapper.
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/rna_starsolo
|Name||Description||Version||Minimum Galaxy Version|
|mapping, demultiplexing and gene quantification for single cell RNA-seq||2.7.8a||20.01|