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Repository rna_starsolo
Name: rna_starsolo
Owner: iuc
Synopsis: RNA STARSolo performs individual cell-level quantification
An ultra fast universal RNA-seq aligner that can optionally perform gene-level and sample-level quantification on the fly.
Note that while very fast, this tool requires a considerable amount of memory. As an example, hg19 requires about 30GB. See
Most of this wrapper was originally written by Jeremy Goecks, with kibbitzing and automated dependency installation by Ross Lazarus.
The scRNA-seq mapping and quantification component is encapsulated within the STARSolo wrapper.
Type: unrestricted
Revision: 12:79b885ce78d7
This revision can be installed: True
Times cloned / installed: 1556

Contents of this repository

Name Description Version Minimum Galaxy Version
mapping, demultiplexing and gene quantification for single cell RNA-seq 2.7.8a 20.01

Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data
Transcriptomics - Tools for use in the study of Transcriptomics.