Repository revision
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Repository stacks_assembleperead
Owner: iuc
Synopsis: Stacks: assemble read pairs by locus (from the Stacks tool suite)
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform.
Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
Type: unrestricted
Revision: 2:fea78fd36a05
This revision can be installed: True
Times cloned / installed: 581
Dependencies of this repository

Repository package_samtools_0_1_19 revision c9bd782f5342 owned by iuc (prior install required)
Repository package_velvet_1_2_10 revision 93d32326537b owned by devteam

Name Version Type
stacks 1.40 package
velvet 1.2.10 package

Contents of this repository

Name Description Version Minimum Galaxy Version
run the STACKS and wrappers 1.40.0 any

Sequence Analysis - Tools for performing Protein and DNA/RNA analysis