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Repository kodoja
Name: kodoja
Owner: abaizan
Synopsis: Kodoja takes the raw data, and uses Kraken and Kaiju to detect viral sequences in RNA-seq or sRNA-seq data.
Kodoja takes the raw data (either fasta or fastq) and uses Kraken, a k-mer-based tool, and Kaiju, which used the Burrows–Wheeler transform, to detect viral sequences in RNA-seq or sRNA-seq data.
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/abaizan/kodoja
Type: unrestricted
Revision: 3:d4111d1de76f
This revision can be installed: True
Times cloned / installed: 169

Contents of this repository

Name Description Version Minimum Galaxy Version
identify viruses from plant RNA sequencing data 0.0.8 16.01