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Repository cat_bins
Name: cat_bins
Owner: iuc
Synopsis: CAT bins from the CAT package
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs.
A CAT reference dataset requires about 250 GB of disk space.
Content homepage: https://github.com/dutilh/CAT
Development repository: https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/cat
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/cat_bins/18676df0cb3a
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/cat_bins
Type: unrestricted
Revision: 1:18676df0cb3a
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Contents of this repository

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Name Description Version Minimum Galaxy Version
annotate with taxonomic classification 5.0.3.1 16.01

Categories
Metagenomics - Tools enabling the study of metagenomes