This tool is one of the PlantTribes collection of automated modular analysis pipelines that utilize objective classifications of complete protein sequences from sequenced plant genomes to perform comparative evolutionary studies. It performs phylogenomic analyses by creating multiple sequence alignments and inferred maximum likelihood phylogenies for orthogroups produced by the GeneFamilyAligner tool. |
hg clone https://toolshed.g2.bx.psu.edu/repos/greg/plant_tribes_gene_family_phylogeny_builder