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Repository varscan_mpileup2snp_from_bam
Name: varscan_mpileup2snp_from_bam
Owner: yhoogstrate
Synopsis: VarScan2 mpileup2snp - optimized for direct BAM/SAM input and parallel mpileup generation
VarScan is a variant caller for high-throughput sequencing data.
Development repository: https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc/tree/master/tools/galaxy-tool-shed-tools
Link to this repository: https://toolshed.g2.bx.psu.edu/view/yhoogstrate/varscan_mpileup2snp_from_bam/9a39c4105901
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/yhoogstrate/varscan_mpileup2snp_from_bam
Type: unrestricted
Revision: 1:9a39c4105901
This revision can be installed: True
Times cloned / installed: 328

Contents of this repository

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Name Description Version Minimum Galaxy Version
VarScan2 SNP/SNV detection; directly reading *.bam file(s) & using parallel mpileup generation, to avoid unnecessairy I/O overhead and increase performance. 2.4.2.a any
VarScan2 SNP/SNV detection; directly from a *.mpileup file. 2.4.2.a any

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA
SAM - Tools for manipulating alignments in the SAM format