VarScan is a variant caller for high-throughput sequencing data. |
hg clone https://toolshed.g2.bx.psu.edu/repos/yhoogstrate/varscan_mpileup2snp_from_bam
Name | Description | Version | Minimum Galaxy Version |
---|---|---|---|
VarScan2 SNP/SNV detection; directly reading *.bam file(s) & using parallel mpileup generation, to avoid unnecessairy I/O overhead and increase performance. | 2.4.2.a | any | |
VarScan2 SNP/SNV detection; directly from a *.mpileup file. | 2.4.2.a | any |