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Repository indel_realigner

Name: indel_realigner

Owner: devteam

Synopsis: Indel Realigner - perform local realignment

Detailed description:

Performs local realignment of reads based on misalignments due
to the presence of indels. Unlike most mappers, this walker uses the full alignment
context to determine whether an appropriate alternate reference (i.e. indel) exists
and updates SAMRecords accordingly.

Content homepage: https://www.broadinstitute.org/gatk/

Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/gatk/indel_realigner

Link to this repository: https://toolshed.g2.bx.psu.edu/view/devteam/indel_realigner/bb0beda6cf83

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/indel_realigner

Type: unrestricted

Revision: 0:bb0beda6cf83

This revision can be installed: True

Times cloned / installed: 2924