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Repository bedtools
Name: bedtools
Owner: iuc
Synopsis: bedtools is a powerful toolset for genome arithmetic
Collectively, the bedtools utilities are a swiss-army knife of
tools for a wide-range of genomics analysis tasks. The most widely-used tools enable
genome arithmetic: that is, set theory on the genome. For example, bedtools allows
one to intersect, merge, count, complement, and shuffle genomic intervals from multiple
files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While
each individual tool is designed to do a relatively simple task (e.g., intersect
two interval files), quite sophisticated analyses can be conducted by combining
multiple bedtools operations.
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Text Manipulation - Tools for manipulating data
Genomic Interval Operations - Tools for operating on genomic intervals