| Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF. While each individual tool is designed to do a relatively simple task (e.g., intersect two interval files), quite sophisticated analyses can be conducted by combining multiple bedtools operations. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/bedtools
| Repository package_bedtools_2_19 revision fb3a854c7104 owned by iuc |
| Name | Version | Type | |
|---|---|---|---|
| bedtools | 2.19.1 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| 2.19.0 | 16.01 | ||
| 2.19.0 | 16.01 | ||
| 2.19.0 | 16.01 | ||
| 2.19.0 | 16.01 | ||
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| 2.19.0 | 16.01 | ||
| 2.19.0 | 16.01 | ||
| 2.19.0 | 16.01 | ||
| (mergeBed) | 2.19.0 | 16.01 | |
| 2.19.0 | 16.01 | ||
| 2.19.0 | 16.01 | ||
| of features in file A across the features in file B (coverageBed) | 2.19.1 | 16.01 | |
| 2.19.0 | 16.01 | ||
| 2.19.0 | 16.01 | ||
| 2.19.0 | 16.01 | ||
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| 2.19.0 | 16.01 | ||