Repository revision
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Repository samtools_slice_bam
Name: samtools_slice_bam
Owner: devteam
Synopsis: Slice BAM by provided regions
Accepts an input BAM file and an input BED file and creates an
output BAM file containing only those alignments that overlap the provided BED intervals.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/samtools_slice_bam
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/devteam/samtools_slice_bam/2b474ebbfc7d
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_slice_bam
Type: unrestricted
Revision: 2:2b474ebbfc7d
This revision can be installed: True
Times cloned / installed: 9079
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 1.2 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
BAM by genomic regions 2.0 any

Categories
SAM - Tools for manipulating alignments in the SAM format