Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository samtools_slice_bam
Name: samtools_slice_bam
Owner: devteam
Synopsis: Accepts an input BAM file and an input BED file and creates an output BAM file containing only those alignments that overlap the provided BED intervals.
Accepts an input BAM file and an input BED file and creates an
output BAM file containing only those alignments that overlap the provided BED intervals.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/samtools_slice_bam
Link to this repository: https://toolshed.g2.bx.psu.edu/view/devteam/samtools_slice_bam/c4325d32b1a2
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/samtools_slice_bam
Type: unrestricted
Revision: 10:c4325d32b1a2
This revision can be installed: True
Times cloned / installed: 9118

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
BAM by genomic regions 2.0.7 24.0

Categories
SAM - Tools for manipulating alignments in the SAM format