Repository bamleftalign
Name: bamleftalign
Owner: devteam
Synopsis: A utility for leftaligning indels in BAM datasets
Based on bamleftalign utility for FreeBayes package.
Link to this repository: https://toolshed.g2.bx.psu.edu/view/devteam/bamleftalign/e65540a91b87
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/bamleftalign
Type: unrestricted
Revision: 0:e65540a91b87
This revision can be installed: True
Times cloned / installed: 993
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository freebayes_0_9_14_8a407cf5f4 revision 77a97e5d2658 owned by devteam
Repository package_samtools_0_1_18 revision 171cd8bc208d owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
freebayes freebayes-0.9.14_8a407cf5f4 package
samtools 0.1.18 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
indels in BAM datasets 0.0.2 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA