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Repository salmon_kallisto_mtx_to_10x
Name: salmon_kallisto_mtx_to_10x
Owner: ebi-gxa
Synopsis: Transforms .mtx matrix and associated labels into a format compatible with tools expecting old-style 10X data
Kallisto and Alevin (and possibly other tools) output an MTX file and associated labels that are not consistent with the old-style 10X, meaning that routines designed to parse those files cannot be used. This tool transforms (in the mathematical sense) the matrix, and reformats the genes file (essentially duplicating the column) to match those earlier conventions.
Content homepage: https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary
Development repository: https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/salmon-kallisto-mtx-to-10x/.shed.yml
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/ebi-gxa/salmon_kallisto_mtx_to_10x/60fa6080f86f
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/salmon_kallisto_mtx_to_10x
Type: unrestricted
Revision: 7:60fa6080f86f
This revision can be installed: True
Times cloned / installed: 473

Contents of this repository

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Name Description Version Minimum Galaxy Version
Transforms .mtx matrix and associated labels into a format compatible with tools expecting old-style 10X data 0.0.1+galaxy3 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis