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Repository snpeff
Name: snpeff
Owner: iuc
Synopsis: Variant annotation and effect prediction tools. It annotates and predicts the effects of variants on genes. There are data managers for tha Galaxy admin to download genome databases.
Variant annotation and effect prediction tools. It annotates and
predicts the effects of variants on genes. There
are data managers for tha Galaxy admin to download genome databases.
Content homepage: http://snpeff.sourceforge.net/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/snpeff
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/snpeff/3aae4f16ac9e
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snpeff
Type: unrestricted
Revision: 31:3aae4f16ac9e
This revision can be installed: True
Times cloned / installed: 8851

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
annotate variants 5.2+galaxy1 23.0
database from Genbank or GFF record 5.2+galaxy1 23.0
list available databases 5.2+galaxy1 23.0
download a pre-built database 5.2+galaxy1 23.0
list chromosome names/lengths 5.2+galaxy1 23.0

Categories
Genome-Wide Association Study - Utilities to support Genome-wide association studies
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA