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Repository snpeff
Name: snpeff
Owner: iuc
Synopsis: SnpEff is a genetic variant annotation and effect prediction toolbox
Variant annotation and effect prediction tools. It annotates and
predicts the effects of variants on genes. There
are data managers for tha Galaxy admin to download genome databases.
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Clone this repository: hg clone
Type: unrestricted
Revision: 27:9473cd297a76
This revision can be installed: True
Times cloned / installed: 7936

Contents of this repository

Name Description Version Minimum Galaxy Version
database from Genbank or GFF record 4.3+T.galaxy6 22.01
annotate variants 4.3+T.galaxy2 16.01
download a pre-built database 4.3+T.galaxy2 16.01
list available databases 4.3+T.galaxy2 16.01
list chromosome names/lengths 4.3+T.galaxy2 16.01

Variant Analysis - Tools for single nucleotide polymorphism data such as WGA