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Repository snpeff
Name: snpeff
Owner: iuc
Synopsis: SnpEff is a genetic variant annotation and effect prediction toolbox
Variant annotation and effect prediction tools. It annotates and
predicts the effects of variants on genes. There
are data managers for tha Galaxy admin to download genome databases.
Content homepage: http://snpeff.sourceforge.net/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/snpeff/c7275bd8b4d6
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snpeff
Type: unrestricted
Revision: 30:c7275bd8b4d6
This revision can be installed: True
Times cloned / installed: 8693

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
annotate variants 5.2+galaxy0 23.0
database from Genbank or GFF record 5.2+galaxy0 23.0
list available databases 5.2+galaxy0 23.0
download a pre-built database 5.2+galaxy0 23.0
list chromosome names/lengths 5.2+galaxy0 23.0

Categories
Genome-Wide Association Study - Utilities to support Genome-wide association studies
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA