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Repository small_rna_maps
Name: small_rna_maps
Owner: artbio
Synopsis: Generates small read maps from alignment BAM files
Generates read count maps from alignment BAM files, using pysam and r-lattice.
In addition to the read counts (bars), median sizes, mean sizes and coverages of
reads mapping at a any given position are plotted in graphs.
Takes sorted BAM files as inputs and produce pdf outputs.  
Content homepage: http://artbio.fr
Development repository: https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_maps
Link to this repository: https://toolshed.g2.bx.psu.edu/view/artbio/small_rna_maps/966bc5c46efd
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/artbio/small_rna_maps
Type: unrestricted
Revision: 34:966bc5c46efd
This revision can be installed: True
Times cloned / installed: 1240

Contents of this repository

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Name Description Version Minimum Galaxy Version
3.1.1 16.01

Categories
RNA - Utilities for RNA
SAM - Tools for manipulating alignments in the SAM format
Graphics - Tools producing images
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data