Repository tagdust_2_31
Name: tagdust_2_31
Owner: brenninc
Synopsis: Runs tools based on http://sourceforge.net/projects/tagdust
"TagDust allows users to specify the expected architecture of a read and converts it into a hidden Markov model. The latter can assign sequences to a particular barcode (or index) even in the presence of sequencing errors. Sequences not matching the architecture (primer dimers, contaminants etc.) are automatically discarded"
Source: http://sourceforge.net/projects/tagdust

Both single and paired ends available.

Depends on:
https://testtoolshed.g2.bx.psu.edu/view/brenninc/data_manager_tagdust_architecture
Development repository: https://github.com/Christian-B/galaxy_shedtools/tree/master/tagdust_2_31
Link to this repository: https://toolshed.g2.bx.psu.edu/view/brenninc/tagdust_2_31/da90c37031bb
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/brenninc/tagdust_2_31
Type: unrestricted
Revision: 1:da90c37031bb
This revision can be installed: True
Times cloned / installed: 147
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_tagdust_2_31 revision 1b0267fab15a owned by brenninc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
tagdust 2.31 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Runs tagdust in paired end mode 0.2 any
Displays a tagdust Architecture file 0.2 any
Runs tagdust in single end mode 0.2 any

Categories
Fastq Manipulation - Tools for manipulating fastq data