Repository paqmir_mirdeep2_mapper
Name: paqmir_mirdeep2_mapper
Owner: smarthey
Synopsis: Process and map reads to a reference genome
This tool is part of the workflow PAQmiR for the Prediction Annotation and Quantification of miRNA with miRDeep2.
The MiRDeep2 Mapper module is designed as a tool to process deep sequencing reads and/or map them to the reference genome.
The module works in sequence space, and can process or map data that is in sequence FASTA format.
A number of the functions of the mapper module are implemented specifically with Solexa/Illumina data in mind.
This wrapper was forked from the rbc_mirdeep2_mapper wrapper of the RNA-Bioinformatics network
  ==> https://www.denbi.de/network/rna-bioinformatics-center-rbc
  ==> https://github.com/bgruening
Modifications are the product of Valentin Marcon & Sylvain Marthey (Thanks to INRA Migale, IFB ressources & INRA GABI)
Content homepage: https://forgemia.inra.fr/sylvain.marthey/paqmir
Development repository: https://forgemia.inra.fr/sylvain.marthey/paqmir
Link to this repository: https://toolshed.g2.bx.psu.edu/view/smarthey/paqmir_mirdeep2_mapper/2e4a523f5bc5
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/smarthey/paqmir_mirdeep2_mapper
Type: unrestricted
Revision: 0:2e4a523f5bc5
This revision can be installed: True
Times cloned / installed: 192

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Name Description Version Minimum Galaxy Version
process and map reads to a reference genome 2.1.0 16.01