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Repository variant_analyzer
Owner: iuc
Synopsis: Collection of tools for analyzing variants in duplex consensus sequencing (DCS) data
Collection of tools for analyzing variants in duplex consensus sequencing (DCS) data
Type: unrestricted
Revision: 1:3556001ff2db
This revision can be installed: True
Times cloned / installed: 249

Contents of this repository

Name Description Version Minimum Galaxy Version
Extracts all tags that carry a mutation in the duplex consensus sequence (DCS) 1.0.1 19.01
Extracts all tags from the single stranded consensus sequence (SSCS) bam file that carry a mutation at the same position a mutation is called in the duplex consensus sequence (DCS) and calculates their frequencies 1.0.1 19.01
Looks for reads with mutation at known positions and calculates frequencies and stats. 1.0.1 19.01

Variant Analysis - Tools for single nucleotide polymorphism data such as WGA